{"id":742,"date":"2014-09-17T02:51:31","date_gmt":"2014-09-16T17:51:31","guid":{"rendered":"http:\/\/blog.marubaram.wo.tc\/?p=742"},"modified":"2019-06-01T02:52:09","modified_gmt":"2019-05-31T17:52:09","slug":"neuron-mpi-configure","status":"publish","type":"post","link":"https:\/\/blog.marubaram.wo.tc\/?p=742","title":{"rendered":"neuron mpi configure"},"content":{"rendered":"\n<p><strong>mpi running <\/strong><br><\/p>\n\n\n\n<p>.\/mpiexec -np 2 $HOME\/neuron\/nrn\/x86_64\/bin\/nrniv -mpi $HOME\/neuron\/nrn\/src\/parallel\/test0.hoc<\/p>\n\n\n\n<p><strong>mpi configure<\/strong><\/p>\n\n\n\n<p>.\/configure &#8211;prefix=$HOME\/mpich &#8211;with-device=ch3:nemesis &#8211;enable-sharedlibs=gcc &#8211;with-pm=gforker &#8211;enable-fast=03 MPICH2LIB_CFLAGS=-march=native MPICH2LIB_FFLAGS=-march=native MPICH2LIB_CXXFLAGS=-march=native MPICH2LIB_F90FLAGS=-march=native<\/p>\n\n\n\n<p>PATH regist<\/p>\n\n\n\n<p>export $PATH=<\/p>\n\n\n\n<p>.mpd.conf <br><\/p>\n\n\n\n<p>chmod 600 .mpd.conf<\/p>\n\n\n\n<p>MPD_SECRETWORD=whatever<br><\/p>\n\n\n\n<p>NEURON configure<\/p>\n\n\n\n<p><code>.\/configure --prefix=\/home\/NeuroMorph\/neuron\/nrn --with-iv=\/home\/NeuroMorph\/neuron\/iv --with-paranrn always_call_mpi_init=yes MPICC=\/home\/NeuroMorph\/mpich\/bin\/mpicc MPICXX=\/home\/NeuroMorph\/mpich\/bin\/mpicxx<br><br><\/code><\/p>\n","protected":false},"excerpt":{"rendered":"<p>mpi running .\/mpiexec -np 2 $HOME\/neuron\/nrn\/x86_64\/bin\/nrniv -mpi $HOME\/neuron\/nrn\/src\/parallel\/test0.hoc mpi configure .\/configure &#8211;prefix=$HOME\/mpich &#8211;with-device=ch3:nemesis &#8211;enable-sharedlibs=gcc &#8211;with-pm=gforker &#8211;enable-fast=03 MPICH2LIB_CFLAGS=-march=native MPICH2LIB_FFLAGS=-march=native MPICH2LIB_CXXFLAGS=-march=native MPICH2LIB_F90FLAGS=-march=native PATH regist export $PATH= .mpd.conf chmod 600 .mpd.conf MPD_SECRETWORD=whatever NEURON configure .\/configure &#8211;prefix=\/home\/NeuroMorph\/neuron\/nrn &#8211;with-iv=\/home\/NeuroMorph\/neuron\/iv &#8211;with-paranrn always_call_mpi_init=yes MPICC=\/home\/NeuroMorph\/mpich\/bin\/mpicc MPICXX=\/home\/NeuroMorph\/mpich\/bin\/mpicxx<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[333],"_links":{"self":[{"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/posts\/742"}],"collection":[{"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=742"}],"version-history":[{"count":1,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/posts\/742\/revisions"}],"predecessor-version":[{"id":743,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=\/wp\/v2\/posts\/742\/revisions\/743"}],"wp:attachment":[{"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=742"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=742"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blog.marubaram.wo.tc\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=742"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}